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PDF1.5 plant defensin 1.5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841943, updated on 18-Sep-2024

Summary

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Official Symbol
PDF1.5
Official Full Name
plant defensin 1.5
Primary source
TAIR:AT1G55010
Locus tag
AT1G55010
See related
Araport:AT1G55010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14C21.57; F14C21_57; plant defensin 1.5
Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
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Genomic context

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See PDF1.5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (20516916..20517531)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene peptidoglycan-binding LysM domain-containing protein Neighboring gene miscRNA Neighboring gene lipoxygenase 1 Neighboring gene RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PDF1.5 Enhances Adaptation to Low Nitrogen Levels and Cadmium Stress. Wu Z, et al. Int J Mol Sci, 2021 Sep 28. PMID 34638794, Free PMC Article
  2. Plant pathogenesis-related (PR) proteins: a focus on PR peptides. Sels J, et al. Plant Physiol Biochem, 2008 Nov. PMID 18674922
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PDF1.5 Enhances Adaptation to Low Nitrogen Levels and Cadmium Stress.
    Title: PDF1.5 Enhances Adaptation to Low Nitrogen Levels and Cadmium Stress.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

NM_001333685.1
NM_104375.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in intracellular monoatomic cation homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
plant defensin 1.5
NP_175899.1
  • plant defensin 1.5 (PDF1.5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.2 (TAIR:AT5G44420.1); Has 114 Blast hits to 114 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20516916..20517531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104375.2 → NP_175899.1  plant defensin 1.5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175899.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ31
    UniProtKB/TrEMBL
    A0A178WL19, A0A5S9WM05, A0A7G2E197
    Conserved Domains (1) summary
    pfam00304
    Location:33 → 80
    Gamma-thionin; Gamma-thionin family

  2. NM_001333685.1 → NP_001321340.1  plant defensin 1.5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQK7, A0A7G2E197
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZ31.1

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