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AGP21 arabinogalactan protein 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841979, updated on 18-Sep-2024

Summary

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Official Symbol
AGP21
Official Full Name
arabinogalactan protein 21
Primary source
TAIR:AT1G55330
Locus tag
AT1G55330
See related
Araport:AT1G55330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
arabinogalactan protein 21; ARABINOGALACTAN PROTEIN 21; ATAGP21; F7A10.11; F7A10_11
Summary
Encodes a putative arabinogalactan-protein (AGP21).
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Genomic context

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See AGP21 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (20648465..20648891, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene acyl-activating enzyme 18 Neighboring gene RNA polymerase II transcription mediator Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF1639) Neighboring gene calpain-type cysteine protease family Neighboring gene tRNA-splicing ligase (DUF239)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104409.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
arabinogalactan protein 21
NP_564686.1
  • arabinogalactan protein 21 (AGP21); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 12 (TAIR:AT3G13520.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20648465..20648891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104409.3 → NP_564686.1  arabinogalactan protein 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564686.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C8A4
    UniProtKB/TrEMBL
    A0A178W6X6, A0A5S9WM24
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C8A4.1

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