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40S ribosomal protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842129, updated on 18-Sep-2024

Summary

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Official Full Name
40S ribosomal protein
Primary source
TAIR:AT1G57540
Locus tag
AT1G57540
See related
Araport:AT1G57540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25P12.4
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (21309895..21311521, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene tRNA-Tyr Neighboring gene Low temperature and salt responsive protein family Neighboring gene myb domain protein 50

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084263.2
NM_104550.4
NM_202313.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
40S ribosomal protein
NP_001077732.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_564723.1
  • unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974042.1
  • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21309895..21311521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084263.2 → NP_001077732.1  40S ribosomal protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077732.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJ65, Q9FVU7

  2. NM_104550.4 → NP_564723.1  40S ribosomal protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564723.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJ65, Q9FVU7

  3. NM_202313.3 → NP_974042.1  40S ribosomal protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974042.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJ65, Q9FVU7
Nucleotide Protein
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