U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MYB50 myb domain protein 50 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842131, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
MYB50
Official Full Name
myb domain protein 50
Primary source
TAIR:AT1G57560
Locus tag
AT1G57560
See related
Araport:AT1G57560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB50; myb domain protein 50; T8L23.3; T8L23_3
Summary
Member of the R2R3 factor gene family.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See MYB50 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (21316730..21318192)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein Neighboring gene Low temperature and salt responsive protein family Neighboring gene ncRNA Neighboring gene SWI-SNF-related chromatin binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. AtMYB50 regulates root cell elongation by upregulating PECTIN METHYLESTERASE INHIBITOR 8 in Arabidopsis thaliana. Mase K, et al. PLoS One, 2023. PMID 38134185, Free PMC Article
  2. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtMYB50 regulates root cell elongation by upregulating PECTIN METHYLESTERASE INHIBITOR 8 in Arabidopsis thaliana.
    Title: AtMYB50 regulates root cell elongation by upregulating PECTIN METHYLESTERASE INHIBITOR 8 in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_104552.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
myb domain protein 50
NP_176068.1
  • myb domain protein 50 (MYB50); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 8919 Blast hits to 8236 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 484; Plants - 5879; Viruses - 6; Other Eukaryotes - 1799 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21316730..21318192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333797.1 → NP_001323229.1  myb domain protein 50 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WD19, A0A1P8AWH1

  2. NM_104552.2 → NP_176068.1  myb domain protein 50 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176068.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WQK3, Q9C695
    Conserved Domains (2) summary
    PLN03091
    Location:1 → 310
    PLN03091; hypothetical protein; Provisional
    pfam00249
    Location:14 → 61
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.