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RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842172, updated on 18-Sep-2024

Summary

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Official Full Name
RNA helicase family protein
Primary source
TAIR:AT1G58050
Locus tag
AT1G58050
See related
Araport:AT1G58050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T15M6.6; T15M6_6
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Genomic context

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Location:
chromosome: 1
Exon count:
34
Sequence:
Chromosome: 1; NC_003070.9 (21478590..21487839, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Defensin-like (DEFL) family protein Neighboring gene RNA helicase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA helicase family protein
NP_176102.1
  • RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G58060.1); Has 11630 Blast hits to 8888 proteins in 1553 species: Archae - 2; Bacteria - 4647; Metazoa - 2623; Fungi - 1414; Plants - 883; Viruses - 235; Other Eukaryotes - 1826 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21478590..21487839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104587.1 → NP_176102.1  RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176102.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C6G0
    UniProtKB/TrEMBL
    A0A654EJ86
    Conserved Domains (6) summary
    smart00847
    Location:1074 → 1168
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:558 → 1323
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:615 → 762
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:871 → 1002
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:1209 → 1345
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cl00054
    Location:396 → 476
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6G0.1

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