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Disease resistance protein (CC-NBS-LRR class) family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842208, updated on 18-Sep-2024

Summary

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Official Full Name
Disease resistance protein (CC-NBS-LRR class) family
Primary source
TAIR:AT1G58390
Locus tag
AT1G58390
See related
Araport:AT1G58390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (21690642..21694447, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Neighboring gene Ribosomal protein S5 family protein Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene Disease resistance protein (CC-NBS-LRR class) family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001333830.1
NM_104619.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Disease resistance protein (CC-NBS-LRR class) family
NP_001319265.1
  • Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58400.1); Has 14341 Blast hits to 13745 proteins in 491 species: Archae - 4; Bacteria - 531; Metazoa - 280; Fungi - 132; Plants - 13314; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21690642..21694447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333830.1 → NP_001319265.1  Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBC6, Q8W474, Q9C644, Q9SM05
    UniProtKB/TrEMBL
    A0A178WH24

  2. NM_104619.3 → NP_176135.1  Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176135.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBC6, Q8W474, Q9C644, Q9SM05
    UniProtKB/TrEMBL
    A0A178WH24
    Conserved Domains (5) summary
    COG4886
    Location:586 → 736
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14798
    Location:6 → 124
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:586 → 610
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:166 → 455
    NB-ARC; NB-ARC domain
    pfam13191
    Location:163 → 285
    AAA_16; AAA ATPase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W474.4

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