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SBP (S-ribonuclease binding protein) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842355, updated on 18-Sep-2024

Summary

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Official Full Name
SBP (S-ribonuclease binding protein) family protein
Primary source
TAIR:AT1G60610
Locus tag
AT1G60610
See related
Araport:AT1G60610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8A5.13; F8A5_13
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (22327792..22330318, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene UbiA prenyltransferase family protein Neighboring gene RNA polymerase I subunit 43 Neighboring gene RALF-like 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001124047.2
NM_001333899.1
NM_001333900.1
NM_104744.4
NM_202326.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SBP (S-ribonuclease binding protein) family protein
NP_001117519.1
  • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G10650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_176260.1
  • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G10650.1); Has 801 Blast hits to 795 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 4; Plants - 348; Viruses - 29; Other Eukaryotes - 104 (source: NCBI BLink).
NP_974055.1
  • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G10650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22327792..22330318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104744.4 → NP_176260.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176260.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E293, Q4TU35
    Conserved Domains (1) summary
    pfam13920
    Location:293 → 334
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_001124047.2 → NP_001117519.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117519.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E293, Q4TU35
    Conserved Domains (1) summary
    pfam13920
    Location:293 → 334
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  3. NM_001333899.1 → NP_001322161.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E293, Q4TU35

  4. NM_001333900.1 → NP_001322160.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E293, Q4TU35

  5. NM_202326.3 → NP_974055.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974055.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E293, Q4TU35
    Conserved Domains (1) summary
    pfam13920
    Location:293 → 334
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein
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