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U2 snRNP auxilliary factor, large subunit, splicing factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842382, updated on 18-Sep-2024

Summary

Official Full Name
U2 snRNP auxilliary factor, large subunit, splicing factor
Primary source
TAIR:AT1G60900
Locus tag
AT1G60900
See related
Araport:AT1G60900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7P1.5; T7P1_5
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Genomic context

Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (22423894..22428053)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Phosphatidylinositol-4-phosphate 5-kinase family protein Neighboring gene AGAMOUS-like-56 Neighboring gene tRNA-Gly Neighboring gene ncRNA

General gene information

NM_104771.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in nuclear speck IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IPI
Inferred from Physical Interaction
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
U2 snRNP auxilliary factor, large subunit, splicing factor
NP_176287.3
  • U2 snRNP auxilliary factor, large subunit, splicing factor; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT4G36690.4); Has 95343 Blast hits to 42389 proteins in 1915 species: Archae - 82; Bacteria - 12197; Metazoa - 47091; Fungi - 9469; Plants - 8106; Viruses - 663; Other Eukaryotes - 17735 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22423894..22428053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104771.4NP_176287.3  U2 snRNP auxilliary factor, large subunit, splicing factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176287.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L716, Q9C961
    UniProtKB/TrEMBL
    A0A178WAX1, A0A654EJT8
    Conserved Domains (1) summary
    TIGR01642
    Location:190587
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor