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TPS04 terpene synthase 04 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842405, updated on 18-Sep-2024

Summary

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Official Symbol
TPS04
Official Full Name
terpene synthase 04
Primary source
TAIR:AT1G61120
Locus tag
AT1G61120
See related
Araport:AT1G61120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11P17.15; F11P17_15; GERANYLLINALOOL SYNTHASE; GES; terpene synthase 04; TERPENE SYNTHASE 4; TPS4
Summary
Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.
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Genomic context

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See TPS04 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (22523635..22528836)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 25 Neighboring gene ncRNA Neighboring gene serine carboxypeptidase-like 32 Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pseudomonas syringae elicits emission of the terpenoid (E,E)-4,8,12-trimethyl-1,3,7,11-tridecatetraene in Arabidopsis leaves via jasmonate signaling and expression of the terpene synthase TPS4. Attaran E, et al. Mol Plant Microbe Interact, 2008 Nov. PMID 18842097
  2. Identification and regulation of TPS04/GES, an Arabidopsis geranyllinalool synthase catalyzing the first step in the formation of the insect-induced volatile C16-homoterpene TMTT. Herde M, et al. Plant Cell, 2008 Apr. PMID 18398052, Free PMC Article
  3. Cryptochrome-1-dependent execution of programmed cell death induced by singlet oxygen in Arabidopsis thaliana. Danon A, et al. Proc Natl Acad Sci U S A, 2006 Nov 7. PMID 17075038, Free PMC Article
  4. Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling. Ehlting J, et al. BMC Genomics, 2008 Apr 9. PMID 18400103, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_104793.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables (E,E)-geranyllinalool synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within diterpenoid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to herbivore IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to jasmonic acid IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to singlet oxygen IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
NOT located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
terpene synthase 04
NP_564772.1
  • terpene synthase 04 (TPS04); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1879 Blast hits to 1869 proteins in 199 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 7; Plants - 1856; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22523635..22528836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104793.3 → NP_564772.1  terpene synthase 04 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564772.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22733, Q84UU3, Q93YV0
    UniProtKB/TrEMBL
    A0A178W6F7
    Conserved Domains (2) summary
    PLN02279
    Location:36 → 788
    PLN02279; ent-kaur-16-ene synthase
    cl00210
    Location:280 → 781
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93YV0.1

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