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RALFL9 ralf-like 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842452, updated on 18-Sep-2024

Summary

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Official Symbol
RALFL9
Official Full Name
ralf-like 9
Primary source
TAIR:AT1G61566
Locus tag
AT1G61566
See related
Araport:AT1G61566
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ralf-like 9
Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
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Genomic context

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See RALFL9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (22717060..22717610, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Seven transmembrane MLO family protein Neighboring gene uncharacterized protein Neighboring gene ralf-like 8 Neighboring gene translocase of the inner mitochondrial membrane 13 Neighboring gene Serine/Threonine kinase; kinase; ATP-binding; sugar-binding; kinase; carbohydrate-binding protein Neighboring gene R-protein L3 B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104838.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hormone activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in calcium-mediated signaling ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell-cell signaling ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ralf-like 9
NP_564779.1
  • ralf-like 9 (RALFL9); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 8 (TAIR:AT1G61563.1); Has 62 Blast hits to 62 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22717060..22717610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104838.2 → NP_564779.1  ralf-like 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564779.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3ECL0, Q8LBS8
    UniProtKB/TrEMBL
    A0A178WI89, A0A5S9WND5, A0A654EK11
    Conserved Domains (1) summary
    pfam05498
    Location:14 → 74
    RALF; Rapid ALkalinization Factor (RALF)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ECL0.1

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