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Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842528, updated on 18-Sep-2024

Summary

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Official Full Name
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Primary source
TAIR:AT1G62305
Locus tag
AT1G62305
See related
Araport:AT1G62305
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (23026692..23029531, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene WRKY family transcription factor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_148618.5
NM_202342.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi medial cisterna HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NP_683459.2
  • Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974071.1
  • Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G11940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23026692..23029531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334027.1 → NP_001323374.1  Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W268, A0A1P8AWU1

  2. NM_148618.5 → NP_683459.2  Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_683459.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EK83, Q6DST3
    Conserved Domains (1) summary
    pfam02485
    Location:70 → 323
    Branch; Core-2/I-Branching enzyme

  3. NM_202342.3 → NP_974071.1  Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974071.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EK83, F4HYR0
    Conserved Domains (1) summary
    pfam02485
    Location:70 → 299
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
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