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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842611, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G63080
Locus tag
AT1G63080
See related
Araport:AT1G63080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16M19.17; F16M19_17
Summary
Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (23387574..23390838, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis NEP1-like protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene phloem protein 2-A11 Neighboring gene GRAS family transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334064.1
NM_104986.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_001319297.1
  • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 67700 Blast hits to 15348 proteins in 310 species: Archae - 4; Bacteria - 76; Metazoa - 1251; Fungi - 1270; Plants - 62359; Viruses - 0; Other Eukaryotes - 2740 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23387574..23390838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334065.1 → NP_001321279.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAN5

  2. NM_001334064.1 → NP_001319297.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAN5

  3. NM_104986.3 → NP_176496.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176496.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAN5
    Conserved Domains (4) summary
    TIGR00756
    Location:241 → 275
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:312 → 339
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:374 → 407
    PPR_1; PPR repeat
    pfam13041
    Location:308 → 356
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAN5.1

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