U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

D111/G-patch domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842701, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
D111/G-patch domain-containing protein
Primary source
TAIR:AT1G63980
Locus tag
AT1G63980
See related
Araport:AT1G63980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22C12.25; F22C12_25
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (23740493..23743302)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Copper transport protein family Neighboring gene isoprenoid F Neighboring gene ncRNA Neighboring gene sporulation 11-2 Neighboring gene WRKY DNA-binding protein 56 Neighboring gene Serine protease inhibitor (SERPIN) family protein Neighboring gene Serine protease inhibitor (SERPIN) family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Two Nucleolar Proteins, GDP1 and OLI2, Function As Ribosome Biogenesis Factors and Are Preferentially Involved in Promotion of Leaf Cell Proliferation without Strongly Affecting Leaf Adaxial-Abaxial Patterning in Arabidopsis thaliana. Kojima K, et al. Front Plant Sci, 2017. PMID 29375609, Free PMC Article
  2. CRY2 interacts with CIS1 to regulate thermosensory flowering via FLM alternative splicing. Zhao Z, et al. Nat Commun, 2022 Nov 17. PMID 36396657, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001036148.1
NM_105071.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of ribosome biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to blue light IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
D111/G-patch domain-containing protein
NP_001031225.1
  • D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564820.1
  • D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18077 Blast hits to 9113 proteins in 508 species: Archae - 9; Bacteria - 1331; Metazoa - 6165; Fungi - 2709; Plants - 1373; Viruses - 248; Other Eukaryotes - 6242 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23740493..23743302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105071.4 → NP_564820.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564820.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q940M0, Q9SH49
    UniProtKB/TrEMBL
    A0A178W8I3, A0A654EKU6
    Conserved Domains (1) summary
    pfam01585
    Location:16 → 59
    G-patch; G-patch domain

  2. NM_001036148.1 → NP_001031225.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031225.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8I3, F4I583
    Conserved Domains (1) summary
    pfam01585
    Location:16 → 59
    G-patch; G-patch domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q940M0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.