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RTNLB3 Reticulan like protein B3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842713, updated on 18-Sep-2024

Summary

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Official Symbol
RTNLB3
Official Full Name
Reticulan like protein B3
Primary source
TAIR:AT1G64090
Locus tag
AT1G64090
See related
Araport:AT1G64090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22C12.15; F22C12_15; Reticulan like protein B3
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Genomic context

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See RTNLB3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (23789062..23791229)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene membrane-associated kinase regulator Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene NAC domain containing protein 27 Neighboring gene Putative membrane lipoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reticulomics: Protein-Protein Interaction Studies with Two Plasmodesmata-Localized Reticulon Family Proteins Identify Binding Partners Enriched at Plasmodesmata, Endoplasmic Reticulum, and the Plasma Membrane. Kriechbaumer V, et al. Plant Physiol, 2015 Nov. PMID 26353761, Free PMC Article
  2. Putting the Squeeze on Plasmodesmata: A Role for Reticulons in Primary Plasmodesmata Formation. Knox K, et al. Plant Physiol, 2015 Aug. PMID 26084919, Free PMC Article
  3. Arabidopsis RETICULON-LIKE3 (RTNLB3) and RTNLB8 Participate in Agrobacterium-Mediated Plant Transformation. Huang FC, et al. Int J Mol Sci, 2018 Feb 24. PMID 29495267, Free PMC Article
  4. Five Arabidopsis reticulon isoforms share endoplasmic reticulum location, topology, and membrane-shaping properties. Sparkes I, et al. Plant Cell, 2010 Apr. PMID 20424177, Free PMC Article
  5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RTNLB proteins, in addition to a role in ER modeling, may play important roles in linking the cortical ER to the plasma membrane.
    Title: Reticulomics: Protein-Protein Interaction Studies with Two Plasmodesmata-Localized Reticulon Family Proteins Identify Binding Partners Enriched at Plasmodesmata, Endoplasmic Reticulum, and the Plasma Membrane.
  2. Data show that reticulon (RTNLB) family proteins RTNLB3 and RTNLB6 are recruited to the cell plate at late telophase, when primary plasmodesmata (PD) are formed, and remain associated with primary PD in the mature cell wall.
    Title: Putting the Squeeze on Plasmodesmata: A Role for Reticulons in Primary Plasmodesmata Formation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105082.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum tubular network organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with cell plate IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasmic side of endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum HDA PubMed 
colocalizes_with endoplasmic reticulum lumen IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum tubular network IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasmodesma HDA PubMed 
located_in plasmodesma IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with plasmodesmatal desmotubule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Reticulan like protein B3
NP_001185307.1
  • Reticulan like protein B3 (RTNLB3); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1).
NP_176592.1
  • Reticulan like protein B3 (RTNLB3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1); Has 1238 Blast hits to 1236 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 713; Fungi - 17; Plants - 487; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23789062..23791229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198378.2 → NP_001185307.1  Reticulan like protein B3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185307.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WA77, F4I596
    Conserved Domains (1) summary
    pfam02453
    Location:80 → 236
    Reticulon; Reticulon

  2. NM_105082.5 → NP_176592.1  Reticulan like protein B3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176592.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SH59
    UniProtKB/TrEMBL
    A0A178WA77, A0A654EM94
    Conserved Domains (1) summary
    pfam02453
    Location:64 → 220
    Reticulon
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SH59.1

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