U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DAA1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842716, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
DAA1
Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT1G64110
Locus tag
AT1G64110
See related
Araport:AT1G64110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DUO1-activated ATPase 1; F22C12.12; F22C12_12
Summary
Target promoter of the male germline-specific transcription factor DUO1.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DAA1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Sequence:
Chromosome: 1; NC_003070.9 (23796698..23801799, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene NAC domain containing protein 27 Neighboring gene Putative membrane lipoprotein Neighboring gene tRNA-Leu Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An Arabidopsis ATPase gene involved in nematode-induced syncytium development and abiotic stress responses. Ali MA, et al. Plant J, 2013 Jun. PMID 23480402, Free PMC Article
  2. The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis. Borg M, et al. Plant Cell, 2011 Feb. PMID 21285328, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that ATPase At1g64110 is important for syncytium and nematode development.
    Title: An Arabidopsis ATPase gene involved in nematode-induced syncytium development and abiotic stress responses.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_001124072.1
NM_001334146.1
NM_001334147.1
NM_105085.2
NM_179511.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen sperm cell differentiation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001319315.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_564824.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 45691 Blast hits to 43156 proteins in 3301 species: Archae - 1573; Bacteria - 21964; Metazoa - 5046; Fungi - 3902; Plants - 3262; Viruses - 32; Other Eukaryotes - 9912 (source: NCBI BLink).
NP_849842.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 45379 Blast hits to 42847 proteins in 3276 species: Archae - 1573; Bacteria - 21664; Metazoa - 5045; Fungi - 3902; Plants - 3254; Viruses - 30; Other Eukaryotes - 9911 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23796698..23801799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179511.2 → NP_849842.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849842.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCS4, A0A654EMD9, F4I5A3
    Conserved Domains (2) summary
    pfam17862
    Location:711 → 755
    AAA_lid_3; AAA+ lid domain
    cl38936
    Location:522 → 687
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_001334146.1 → NP_001319315.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEJ0, B3H7I9

  3. NM_105085.2 → NP_564824.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564824.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCS4, Q940D1
    Conserved Domains (3) summary
    smart00382
    Location:551 → 685
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:553 → 684
    AAA; ATPase family associated with various cellular activities (AAA)
    cl21455
    Location:523 → 571
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. NM_001124072.1 → NP_001117544.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117544.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEJ0, B3H7I9
    Conserved Domains (3) summary
    smart00382
    Location:554 → 688
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:556 → 687
    AAA; ATPase family associated with various cellular activities (AAA)
    cl21455
    Location:526 → 574
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. NM_001334147.1 → NP_001323399.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCS4, A0A654EMD9, F4I5A3
    Conserved Domains (2) summary
    pfam17862
    Location:711 → 755
    AAA_lid_3; AAA+ lid domain
    cl38936
    Location:522 → 687
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.