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Ribosomal protein S5 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842796, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S5 family protein
Primary source
TAIR:AT1G64880
Locus tag
AT1G64880
See related
Araport:AT1G64880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13O11.18; F13O11_18
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (24105611..24109243)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene sigma factor A Neighboring gene uncharacterized protein Neighboring gene Major facilitator superfamily protein Neighboring gene cytochrome P450, family 89, subfamily A, polypeptide 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_105162.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endosome HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S5 family protein
NP_564842.1
  • Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, Golgi apparatus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal (InterPro:IPR013810); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT2G33800.1); Has 12743 Blast hits to 11445 proteins in 2840 species: Archae - 327; Bacteria - 5337; Metazoa - 1616; Fungi - 508; Plants - 194; Viruses - 58; Other Eukaryotes - 4703 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24105611..24109243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105162.3 → NP_564842.1  Ribosomal protein S5 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564842.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WD24, A0A7G2E4W6, Q6GKU7
    Conserved Domains (1) summary
    COG0098
    Location:362 → 511
    RpsE; Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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