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Eukaryotic aspartyl protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842933, updated on 18-Sep-2024

Summary

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Official Full Name
Eukaryotic aspartyl protease family protein
Primary source
TAIR:AT1G66180
Locus tag
AT1G66180
See related
Araport:AT1G66180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15E12.7; F15E12_7
Summary
The gene encodes a putative aspartyl protease (ASP). Its expression is induced in response to light and ascorbate.
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (24647121..24648839)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of aspartyl protease and C3HC4-type RING zinc finger genes are responsive to ascorbic acid in Arabidopsis thaliana. Gao Y, et al. J Exp Bot, 2011 Jun. PMID 21421703, Free PMC Article
  2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_105289.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within response to L-ascorbic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Eukaryotic aspartyl protease family protein
NP_564867.1
  • Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G37540.1); Has 1897 Blast hits to 1884 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 164; Plants - 1696; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24647121..24648839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105289.3 → NP_564867.1  Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564867.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W3U5, A0A5S9WPU0, Q8L8L6, Q9C8C9
    Conserved Domains (2) summary
    cd05476
    Location:73 → 426
    pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
    PTZ00165
    Location:78 → 124
    PTZ00165; aspartyl protease; Provisional
Nucleotide Protein
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