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Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843006, updated on 18-Sep-2024

Summary

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Official Full Name
Protein kinase superfamily protein
Primary source
TAIR:AT1G66880
Locus tag
AT1G66880
See related
Araport:AT1G66880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4N21.1; F4N21_1
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (24946928..24955694)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 50S ribosomal-like protein Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334252.1
NM_001334253.1
NM_105359.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein kinase superfamily protein
NP_176860.2
  • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT5G38210.1); Has 129213 Blast hits to 127053 proteins in 4833 species: Archae - 128; Bacteria - 14675; Metazoa - 47420; Fungi - 11551; Plants - 35229; Viruses - 624; Other Eukaryotes - 19586 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24946928..24955694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105359.3 → NP_176860.2  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176860.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ELM8
    Conserved Domains (3) summary
    smart00219
    Location:969 → 1239
    TyrKc; Tyrosine kinase, catalytic domain
    pfam14380
    Location:761 → 846
    WAK_assoc; Wall-associated receptor kinase C-terminal
    cl21453
    Location:973 → 1242
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001334252.1 → NP_001320658.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANH8
    Conserved Domains (3) summary
    pfam13947
    Location:39 → 96
    GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
    pfam14380
    Location:383 → 467
    WAK_assoc; Wall-associated receptor kinase C-terminal
    cl21453
    Location:594 → 863
    PKc_like; Protein Kinases, catalytic domain

  3. NM_001334253.1 → NP_001320657.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANI2
Nucleotide Protein
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