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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843074, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT1G67530
Locus tag
AT1G67530
See related
Araport:AT1G67530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12B7.8; F12B7_8
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (25307617..25311308)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene lectin protein kinase family protein Neighboring gene uncharacterized protein Neighboring gene urease Neighboring gene PLAT/LH2 domain-containing lipoxygenase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
  2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001160983.2
NM_001334314.1
NM_001334315.1
NM_105420.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_001154455.1
  • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 3478 Blast hits to 3233 proteins in 245 species: Archae - 0; Bacteria - 16; Metazoa - 777; Fungi - 226; Plants - 2201; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).
NP_176920.1
  • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 3478 Blast hits to 3233 proteins in 245 species: Archae - 0; Bacteria - 16; Metazoa - 777; Fungi - 226; Plants - 2201; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25307617..25311308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105420.3 → NP_176920.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176920.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAG5
    UniProtKB/TrEMBL
    A0A178W7M9, A0A5S9WQ88, A0A7G2E768
    Conserved Domains (2) summary
    smart00504
    Location:275 → 338
    Ubox; Modified RING finger domain
    sd00043
    Location:553 → 579
    ARM; armadillo repeat [structural motif]

  2. NM_001334314.1 → NP_001322109.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASY0

  3. NM_001160983.2 → NP_001154455.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154455.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAG5
    UniProtKB/TrEMBL
    A0A178W7M9, A0A5S9WQ88, A0A7G2E768
    Conserved Domains (2) summary
    smart00504
    Location:275 → 338
    Ubox; Modified RING finger domain
    sd00043
    Location:553 → 579
    ARM; armadillo repeat [structural motif]

  4. NM_001334315.1 → NP_001322110.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAG5
    UniProtKB/TrEMBL
    A0A178W7M9, A0A5S9WQ88, A0A7G2E768
    Conserved Domains (2) summary
    smart00504
    Location:275 → 338
    Ubox; Modified RING finger domain
    sd00043
    Location:553 → 579
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAG5.1

Gene LinkOut

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