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Class II aaRS and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843171, updated on 18-Sep-2024

Summary

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Official Full Name
Class II aaRS and biotin synthetases superfamily protein
Primary source
TAIR:AT1G68420
Locus tag
AT1G68420
See related
Araport:AT1G68420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2E12.3; T2E12_3
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (25653893..25654156)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat transmembrane protein kinase family protein Neighboring gene ncRNA Neighboring gene Protein phosphatase 2C family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Class II aaRS and biotin synthetases superfamily protein
NP_177009.1
  • Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT5G56680.1); Has 4271 Blast hits to 4271 proteins in 1777 species: Archae - 237; Bacteria - 2945; Metazoa - 224; Fungi - 266; Plants - 114; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25653893..25654156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105513.1 → NP_177009.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177009.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBI4, A0A5S9WQJ2, A0A654EM74, Q9M9C7
    Conserved Domains (1) summary
    PLN02221
    Location:1 → 77
    PLN02221; asparaginyl-tRNA synthetase
Nucleotide Protein
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