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Armadillo/beta-catenin-like repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843228, updated on 18-Sep-2024

Summary

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Official Full Name
Armadillo/beta-catenin-like repeat family protein
Primary source
TAIR:AT1G68940
Locus tag
AT1G68940
See related
Araport:AT1G68940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6L1.12; T6L1_12
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (25921453..25926075, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene tRNA-Phe

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334394.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Armadillo/beta-catenin-like repeat family protein
NP_001154461.2
  • Armadillo/beta-catenin-like repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 2072 Blast hits to 1938 proteins in 179 species: Archae - 0; Bacteria - 128; Metazoa - 110; Fungi - 40; Plants - 1633; Viruses - 3; Other Eukaryotes - 158 (source: NCBI BLink).
NP_001319352.1
  • Armadillo/beta-catenin-like repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 1977 Blast hits to 1849 proteins in 171 species: Archae - 0; Bacteria - 125; Metazoa - 104; Fungi - 38; Plants - 1549; Viruses - 3; Other Eukaryotes - 158 (source: NCBI BLink).
NP_001319353.1
  • Armadillo/beta-catenin-like repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 2044 Blast hits to 1910 proteins in 179 species: Archae - 0; Bacteria - 128; Metazoa - 110; Fungi - 40; Plants - 1604; Viruses - 3; Other Eukaryotes - 159 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25921453..25926075 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334395.1 → NP_001319353.1  Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2G9, F4HZ07

  2. NM_001160989.2 → NP_001154461.2  Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154461.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAA7
    UniProtKB/TrEMBL
    F4HZ08
    Conserved Domains (3) summary
    smart00504
    Location:249 → 315
    Ubox; Modified RING finger domain
    cd00020
    Location:488 → 606
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:358 → 394
    ARM; armadillo repeat [structural motif]

  3. NM_001334394.1 → NP_001319352.1  Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2G9, A0A2H1ZEF3
Nucleotide Protein
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