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SP1L2 SPIRAL1-like2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843254, updated on 18-Sep-2024

Summary

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Official Symbol
SP1L2
Official Full Name
SPIRAL1-like2
Primary source
TAIR:AT1G69230
Locus tag
AT1G69230
See related
Araport:AT1G69230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4N2.18; SPIRAL1-like2
Summary
SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.
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Genomic context

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See SP1L2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (26026253..26027771, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene fructokinase-like protein Neighboring gene Uncharacterized protein family UPF0090 Neighboring gene Protein kinase superfamily protein Neighboring gene methyl esterase 15 Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SPIRAL1 encodes a plant-specific microtubule-localized protein required for directional control of rapidly expanding Arabidopsis cells. Nakajima K, et al. Plant Cell, 2004 May. PMID 15084720, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105590.3
NM_202381.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cortical microtubule organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SPIRAL1-like2
NP_177083.1
  • SPIRAL1-like2 (SP1L2); BEST Arabidopsis thaliana protein match is: SPIRAL1-like1 (TAIR:AT1G26355.1); Has 157 Blast hits to 132 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
NP_974110.1
  • SPIRAL1-like2 (SP1L2); BEST Arabidopsis thaliana protein match is: SPIRAL1-like1 (TAIR:AT1G26355.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26026253..26027771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105590.3 → NP_177083.1  SPIRAL1-like2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177083.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LBS7, Q9LE54
    UniProtKB/TrEMBL
    A0A178WC94, A0A5S9WTB4

  2. NM_202381.2 → NP_974110.1  SPIRAL1-like2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974110.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LBS7, Q9LE54
    UniProtKB/TrEMBL
    A0A178WC94, A0A5S9WTB4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LE54.1

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