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MYB105 myb domain protein 105 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843292, updated on 18-Sep-2024

Summary

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Official Symbol
MYB105
Official Full Name
myb domain protein 105
Primary source
TAIR:AT1G69560
Locus tag
AT1G69560
See related
Araport:AT1G69560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATMYB105; F10D13.19; F10D13_19; LATERAL ORGAN FUSION 2; LOF2; myb domain protein 105; MYB DOMAIN PROTEIN 105
Summary
Encodes LOF2 (LATERAL ORGAN FUSION2), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF1 (At1g26780).
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Genomic context

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See MYB105 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (26157702..26159094)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene disease resistance protein (TIR-NBS-LRR class) Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene ncRNA Neighboring gene Homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis. Lee DK, et al. Development, 2009 Jul. PMID 19542355
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105625.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within organ boundary specification between lateral organs and the meristem IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 105
NP_177115.1
  • myb domain protein 105 (MYB105); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 117 (TAIR:AT1G26780.2); Has 8910 Blast hits to 7943 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 941; Fungi - 606; Plants - 5396; Viruses - 6; Other Eukaryotes - 1961 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26157702..26159094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334415.1 → NP_001321037.1  myb domain protein 105 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8APT7, A0A7G2E3H1

  2. NM_105625.3 → NP_177115.1  myb domain protein 105 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177115.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SEZ4
    UniProtKB/TrEMBL
    A0A7G2E3H1
    Conserved Domains (1) summary
    cl28544
    Location:96 → 233
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SEZ4.1

Gene LinkOut

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