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SPDS2 spermidine synthase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843367, updated on 18-Sep-2024

Summary

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Official Symbol
SPDS2
Official Full Name
spermidine synthase 2
Primary source
TAIR:AT1G70310
Locus tag
AT1G70310
See related
Araport:AT1G70310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17O7.16; F17O7_16; spermidine synthase 2
Summary
Spermidine synthase.
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Genomic context

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See SPDS2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (26485238..26487595, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene trehalose-6-phosphatase synthase S8 Neighboring gene K+ uptake permease 6 Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aminopropyltransferases involved in polyamine biosynthesis localize preferentially in the nucleus of plant cells. Belda-Palazón B, et al. PLoS One, 2012. PMID 23056524, Free PMC Article
  2. A polyamine metabolon involving aminopropyl transferase complexes in Arabidopsis. Panicot M, et al. Plant Cell, 2002 Oct. PMID 12368503, Free PMC Article
  3. Characterization of the spermidine synthase-related gene family in Arabidopsis thaliana. Hanzawa Y, et al. FEBS Lett, 2002 Sep 11. PMID 12220656
  4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105699.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables spermidine synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within spermidine biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in spermidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
spermidine synthase 2
NP_177188.1
  • spermidine synthase 2 (SPDS2); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5357 Blast hits to 5354 proteins in 1531 species: Archae - 177; Bacteria - 2946; Metazoa - 372; Fungi - 210; Plants - 425; Viruses - 0; Other Eukaryotes - 1227 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26485238..26487595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105699.4 → NP_177188.1  spermidine synthase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177188.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48661, O64606
    UniProtKB/TrEMBL
    A0A178WP96, A0A384L9M6, A0A5S9WRG0, Q5PNT7
    Conserved Domains (1) summary
    PLN02366
    Location:35 → 340
    PLN02366; spermidine synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48661.2

Gene LinkOut

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