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dicer-like protein (DUF936) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843370, updated on 18-Sep-2024

Summary

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Official Full Name
dicer-like protein (DUF936)
Primary source
TAIR:AT1G70340
Locus tag
AT1G70340
See related
Araport:AT1G70340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17O7.12; F17O7_12
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (26503961..26506672, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ubiquitin-protein ligase 2 Neighboring gene uncharacterized protein Neighboring gene equilibrative nucleotide transporter 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The microtubule-nucleating factor MACERATOR tethers AUGMIN7 to microtubules and governs phragmoplast architecture. Schmidt-Marcec S, et al. Plant Cell, 2024 Mar 29. PMID 38079222, Free PMC Article
  2. CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels. Sasaki T, et al. Plant Cell, 2017 Dec. PMID 29133465, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_105702.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables gamma-tubulin binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule nucleation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
dicer-like protein (DUF936)
NP_177191.1
  • Plant protein of unknown function (DUF936); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT1G23790.1); Has 227 Blast hits to 191 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26503961..26506672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105702.4 → NP_177191.1  dicer-like protein (DUF936) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177191.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EMQ1, O64602, Q67YD7
    Conserved Domains (1) summary
    pfam06075
    Location:4 → 461
    DUF936; Plant protein of unknown function (DUF936)
Nucleotide Protein
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