E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
Primary source: TAIR:AT1G72175
Locus tag: AT1G72175
See related: Araport:AT1G72175
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (27157875..27159735)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001334517.1

Supported by ESTs:

NM_105876.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)

NP_565037.1

FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G22510.1); Has 671 Blast hits to 671 proteins in 108 species: Archae - 0; Bacteria - 8; Metazoa - 504; Fungi - 36; Plants - 67; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

27157875..27159735

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105876.4 → NP_565037.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_565037.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W9L9, Q93WJ5

Conserved Domains (3) summary

cd00162
Location:10 → 52

RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]

pfam06803
Location:130 → 155

DUF1232; Protein of unknown function (DUF1232)

cl17238
Location:10 → 53

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
NM_001334517.1 → NP_001323299.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AWL5