U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATL3 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843563, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ATL3
Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT1G72310
Locus tag
AT1G72310
See related
Araport:AT1G72310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RING-H2 ZINC FINGER PROTEIN ATL3; T9N14.21
Summary
Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATL3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (27225665..27227545)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Kunitz family trypsin and protease inhibitor protein Neighboring gene Leucine-rich receptor-like protein kinase family protein Neighboring gene pumilio 23 Neighboring gene alanine aminotransferase 2 Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_105890.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RING/U-box superfamily protein
NP_177375.1
  • ATL3; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 10122 Blast hits to 10073 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 2687; Fungi - 787; Plants - 5131; Viruses - 60; Other Eukaryotes - 1457 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27225665..27227545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105890.2 → NP_177375.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177375.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XF63
    UniProtKB/TrEMBL
    A0A5S9WS06, A0A7G2E5A6, Q0WT62
    Conserved Domains (1) summary
    cd16461
    Location:126 → 169
    RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XF63.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools