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LPA3 Low PSII Accumulation 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843637, updated on 18-Sep-2024

Summary

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Official Symbol
LPA3
Official Full Name
Low PSII Accumulation 3
Primary source
TAIR:AT1G73060
Locus tag
AT1G73060
See related
Araport:AT1G73060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3N23.26; F3N23_26; Low PSII Accumulation 3; Low PSII Accumulation 3
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Genomic context

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See LPA3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (27478970..27481561)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNF7 family protein Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene uncharacterized protein Neighboring gene Leucine-rich repeat family protein Neighboring gene PEP1 receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
  3. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_105964.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
Low PSII Accumulation 3
NP_565054.1
  • Low PSII Accumulation 3 (LPA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1995) (TAIR:AT5G48790.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27478970..27481561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105964.5 → NP_565054.1  Low PSII Accumulation 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565054.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H0W0, Q8LFG2, Q9SSM1
    UniProtKB/TrEMBL
    A0A178W661, A0A5S9WTW5
    Conserved Domains (1) summary
    pfam09353
    Location:56 → 310
    DUF1995; Domain of unknown function (DUF1995)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H0W0.1

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