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TRM4 LONGIFOLIA protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843756, updated on 18-Sep-2024

Summary

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Official Symbol
TRM4
Official Full Name
LONGIFOLIA protein
Primary source
TAIR:AT1G74160
Locus tag
AT1G74160
See related
Araport:AT1G74160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9E11.1; F9E11_1; TON1 Recruiting Motif 4
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Genomic context

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See TRM4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (27885911..27891436)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Rhomboid-related intramembrane serine protease family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene receptor like protein 13 Neighboring gene receptor like protein 14 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3. Yang B, et al. New Phytol, 2019 Jan. PMID 30277578, Free PMC Article
  2. Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24. Lee YK, et al. Plant Mol Biol, 2018 May. PMID 29616436
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The results indicate that TRM4 is essential for microtubule array organization and therefore correct cellulose orientation in the SCE cells, as well as the establishment of the subsequent mucilage architecture.
    Title: TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3.
  2. LONGIFOLIA related genes play an important role in polar cell elongation by changing turgor pressure and controlling the activation of XTH17 and XTH24. [LNG3]
    Title: Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001334632.1
NM_001334633.1
NM_106076.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of monopolar cell growth IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within unidimensional cell growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
LONGIFOLIA protein
NP_177556.3
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27885911..27891436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106076.4 → NP_177556.3  LONGIFOLIA protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177556.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WU87, A0A7G2E780, Q0WNQ5
    Conserved Domains (2) summary
    PTZ00108
    Location:423 → 653
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam14309
    Location:820 → 1002
    DUF4378; Domain of unknown function (DUF4378)

  2. NM_001334632.1 → NP_001320787.1  LONGIFOLIA protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WQH5, A0A1P8ANX7

  3. NM_001334633.1 → NP_001320788.1  LONGIFOLIA protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WQH5, A0A1P8ANX7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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