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DUF620 family protein (DUF620) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843853, updated on 18-Sep-2024

Summary

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Official Full Name
DUF620 family protein (DUF620)
Primary source
TAIR:AT1G75160
Locus tag
AT1G75160
See related
Araport:AT1G75160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22H5.11; F22H5_11
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (28209407..28211826)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA ligase-like protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RHO OF PLANT proteins are essential for pollen germination in Arabidopsis. Xiang X, et al. Plant Physiol, 2023 Aug 31. PMID 36974907
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RHO OF PLANT proteins are essential for pollen germination in Arabidopsis.
    Title: RHO OF PLANT proteins are essential for pollen germination in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_106172.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DUF620 family protein (DUF620)
NP_177652.2
  • Protein of unknown function (DUF620); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT5G66740.1); Has 216 Blast hits to 215 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28209407..28211826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106172.3 → NP_177652.2  DUF620 family protein (DUF620) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177652.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WUH6, A0A654EP64, F4HXG1
    Conserved Domains (1) summary
    pfam04788
    Location:143 → 388
    DUF620; Protein of unknown function (DUF620)
Nucleotide Protein
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