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BLH3 BEL1-like homeodomain 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843877, updated on 18-Sep-2024

Summary

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Official Symbol
BLH3
Official Full Name
BEL1-like homeodomain 3
Primary source
TAIR:AT1G75410
Locus tag
AT1G75410
See related
Araport:AT1G75410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BEL1-like homeodomain 3; F1B16.6; F1B16_6
Summary
BEL1-like homeodomain 3 (BLH3)
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Genomic context

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See BLH3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (28299786..28302728, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RING/U-box superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene BEL1-like homeodomain 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ovate family protein1 interaction with BLH3 regulates transition timing from vegetative to reproductive phase in Arabidopsis. Zhang L, et al. Biochem Biophys Res Commun, 2016 Feb 12. PMID 26809096
  2. Binding properties of the complex formed by the Arabidopsis TALE homeodomain proteins STM and BLH3 to DNA containing single and double target sites. Viola IL, et al. Biochimie, 2009 Aug. PMID 19442701
  3. Nuclear import of the transcription factor SHOOT MERISTEMLESS depends on heterodimerization with BLH proteins expressed in discrete sub-domains of the shoot apical meristem of Arabidopsis thaliana. Cole M, et al. Nucleic Acids Res, 2006. PMID 16513846, Free PMC Article
  4. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. Hackbusch J, et al. Proc Natl Acad Sci U S A, 2005 Mar 29. PMID 15781858, Free PMC Article
  5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. These results support our assumption that, by interacting with OFP1, BLH3 forms a functional protein complex that controls timing of progression from vegetative to reproductive phase.
    Title: Ovate family protein1 interaction with BLH3 regulates transition timing from vegetative to reproductive phase in Arabidopsis.
  2. the DNA-binding properties of the complex formed by the Arabidopsis TALE homeodomain (HD) proteins STM and BLH3
    Title: Binding properties of the complex formed by the Arabidopsis TALE homeodomain proteins STM and BLH3 to DNA containing single and double target sites.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084358.2
NM_001334686.1
NM_106195.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
BEL1-like homeodomain 3
NP_001077827.1
  • BEL1-like homeodomain 3 (BLH3); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 10 (TAIR:AT1G19700.3); Has 5228 Blast hits to 5212 proteins in 344 species: Archae - 0; Bacteria - 24; Metazoa - 2027; Fungi - 328; Plants - 2469; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
NP_177674.1
  • BEL1-like homeodomain 3 (BLH3); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 10 (TAIR:AT1G19700.3); Has 5228 Blast hits to 5212 proteins in 344 species: Archae - 0; Bacteria - 24; Metazoa - 2027; Fungi - 328; Plants - 2469; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28299786..28302728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106195.5 → NP_177674.1  BEL1-like homeodomain 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177674.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WW07, Q8W4I2, Q9FWS9
    UniProtKB/TrEMBL
    A0A178W4C6, A0A5S9WUL5, A0A7G2E6E9
    Conserved Domains (2) summary
    pfam05920
    Location:364 → 403
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:168 → 296
    POX; Associated with HOX

  2. NM_001334686.1 → NP_001320321.1  BEL1-like homeodomain 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AMF2

  3. NM_001084358.2 → NP_001077827.1  BEL1-like homeodomain 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077827.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WW07, Q8W4I2, Q9FWS9
    UniProtKB/TrEMBL
    A0A178W4C6, A0A5S9WUL5, A0A7G2E6E9
    Conserved Domains (2) summary
    pfam05920
    Location:364 → 403
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:168 → 296
    POX; Associated with HOX
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FWS9.1

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