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Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843937, updated on 18-Sep-2024

Summary

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Official Full Name
Pseudouridine synthase family protein
Primary source
TAIR:AT1G76050
Locus tag
AT1G76050
See related
Araport:AT1G76050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4O12.210; T4O12_210
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (28540784..28543227)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATPase, V1 complex, subunit B protein Neighboring gene calcium-dependent protein kinase 29 Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. Yu F, et al. Plant Cell, 2008 Jul. PMID 18599582, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_106254.3
NM_202422.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pseudouridine synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pseudouridine synthase family protein
NP_177732.2
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); Has 15192 Blast hits to 15192 proteins in 2580 species: Archae - 12; Bacteria - 11504; Metazoa - 97; Fungi - 82; Plants - 90; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink).
NP_974151.1
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluC/RluD (InterPro:IPR006225), Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G19440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28540784..28543227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202422.3 → NP_974151.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974151.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3ECD0, Q8GY94
    UniProtKB/TrEMBL
    A0A178WC45, A0A654F028
    Conserved Domains (3) summary
    cd02869
    Location:157 → 399
    PseudoU_synth_RluCD_like; Pseudouridine synthase, RsuA/RluD family
    COG0564
    Location:73 → 415
    RluA; Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]
    cd00165
    Location:82 → 161
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...

  2. NM_106254.3 → NP_177732.2  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177732.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3ECD0
    Conserved Domains (3) summary
    cd02869
    Location:157 → 298
    PseudoU_synth_RluCD_like; Pseudouridine synthase, RsuA/RluD family
    COG0564
    Location:73 → 301
    RluA; Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]
    cd00165
    Location:82 → 161
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ECD0.1

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