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AMP-dependent synthetase and ligase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843962, updated on 18-Sep-2024

Summary

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Official Full Name
AMP-dependent synthetase and ligase family protein
Primary source
TAIR:AT1G76290
Locus tag
AT1G76290
See related
Araport:AT1G76290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15M4.21; F15M4_21
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (28623398..28625408, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 Neighboring gene O-fucosyltransferase family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene snRNP core protein SMD3 Neighboring gene CYCLIN B2;4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_106279.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AMP-dependent synthetase and ligase family protein
NP_177756.1
  • AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 1 (TAIR:AT1G20560.1); Has 63645 Blast hits to 61448 proteins in 3348 species: Archae - 1176; Bacteria - 38905; Metazoa - 2898; Fungi - 2339; Plants - 2105; Viruses - 1; Other Eukaryotes - 16221 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28623398..28625408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106279.2 → NP_177756.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177756.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFW5, Q9SGQ5
    UniProtKB/TrEMBL
    A0A178W8W2, A0A5S9WUU1
    Conserved Domains (2) summary
    cd05915
    Location:13 → 532
    ttLC_FACS_like; Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles
    PRK08162
    Location:2 → 538
    PRK08162; acyl-CoA synthetase; Validated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SFW5.1

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