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CELLULOSE SYNTHASE INTERACTIVE 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844082, updated on 18-Sep-2024

Summary

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Official Full Name
CELLULOSE SYNTHASE INTERACTIVE 3
Primary source
TAIR:AT1G77460
Locus tag
AT1G77460
See related
Araport:AT1G77460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CELLULOSE SYNTHASE INTERACTIVE 3; CSI3; T5M16.5; T5M16_5
Summary
Encodes a plasma membrane, microtubule associated protein with sequence similarity to CSI1 that is involved in cellulose biosynthesis and cell elongation. A mutation in CSI3 alone do not appear to affect growth but enhances the cell elongation phenotype of CSI1 mutants. CSI3 co localizes with CSI1 and CESA3 and CESA6.
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (29103608..29111956)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene NAC domain containing protein 32 Neighboring gene replication factor C subunit 3 Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene thylakoidal ascorbate peroxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis. Lei L, et al. Plant Cell, 2013 Dec. PMID 24368796, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CSI3 is an important regulator of plant cellulose biosynthesis and plant anisotropic cell growth that modulates the velocity of CSCs in both a microtubule-dependent and microtubule-independent manner. [CSI3]
    Title: Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_001198490.2
NM_001334782.1
NM_001334783.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in anisotropic cell growth IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plant-type cell wall cellulose biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein localization to cortical microtubule cytoskeleton IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within unidimensional cell growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of cellulose synthase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cortical microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
CELLULOSE SYNTHASE INTERACTIVE 3
NP_001185419.1
  • Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G44120.1).
NP_001319395.1
  • Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 membrane targeting protein (InterPro:IPR018029), Armadillo (InterPro:IPR000225), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G44120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29103608..29111956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106395.4 → NP_177870.2  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177870.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I718, Q8GXS1, Q9CAQ9
    UniProtKB/TrEMBL
    A0A5S9WV56
    Conserved Domains (3) summary
    PLN03200
    Location:25 → 2130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00044
    Location:125 → 149
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:473 → 498
    ARM; armadillo repeat [structural motif]

  2. NM_001198490.2 → NP_001185419.1  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185419.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I718, Q8GXS1, Q9CAQ9
    UniProtKB/TrEMBL
    A0A5S9WV56
    Conserved Domains (3) summary
    PLN03200
    Location:25 → 2130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00044
    Location:125 → 149
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:473 → 498
    ARM; armadillo repeat [structural motif]

  3. NM_001334783.1 → NP_001322685.1  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I718, Q8GXS1, Q9CAQ9
    UniProtKB/TrEMBL
    A0A5S9WV56
    Conserved Domains (3) summary
    PLN03200
    Location:25 → 2130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00044
    Location:125 → 149
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:473 → 498
    ARM; armadillo repeat [structural motif]

  4. NM_001334782.1 → NP_001319395.1  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I718, Q8GXS1, Q9CAQ9
    UniProtKB/TrEMBL
    A0A5S9WV56
    Conserved Domains (3) summary
    PLN03200
    Location:25 → 2130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00044
    Location:125 → 149
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:473 → 498
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4I718.1

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