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TPPB trehalose-6-phosphate phosphatase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844144, updated on 18-Sep-2024

Summary

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Official Symbol
TPPB
Official Full Name
trehalose-6-phosphate phosphatase
Primary source
TAIR:AT1G78090
Locus tag
AT1G78090
See related
Araport:AT1G78090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis thaliana trehalose-6-phosphate phosphatase B; ATTPPB; T11I11.2; T11I11_2; trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE PHOSPHATASE; trehalose-6-phosphate phosphatase B
Summary
homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases
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Genomic context

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See TPPB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (29373803..29376639)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Trehalose-6-phosphate phosphatases from Arabidopsis thaliana: identification by functional complementation of the yeast tps2 mutant. Vogel G, et al. Plant J, 1998 Mar. PMID 9681009
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001334818.1
NM_106458.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables trehalose-phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within trehalose biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
trehalose-6-phosphate phosphatase
NP_177932.1
  • trehalose-6-phosphate phosphatase (TPPB); CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G22210.1); Has 2381 Blast hits to 2375 proteins in 857 species: Archae - 41; Bacteria - 1374; Metazoa - 220; Fungi - 153; Plants - 455; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29373803..29376639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106458.4 → NP_177932.1  trehalose-6-phosphate phosphatase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177932.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64897, Q9C9S4
    UniProtKB/TrEMBL
    A0A178W8D8, A0A5S9WVD3, A0A654EQ74
    Conserved Domains (1) summary
    cl21460
    Location:1 → 368
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. NM_001334818.1 → NP_001322316.1  trehalose-6-phosphate phosphatase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8D8, A0A1P8ATL8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9S4.1

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