U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844209, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
Primary source
TAIR:AT1G78730
Locus tag
AT1G78730
See related
Araport:AT1G78730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9K20.23; F9K20_23
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (29607689..29609441, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene BES1/BZR1 homolog 4 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 42 Neighboring gene SecY protein transport family protein Neighboring gene RNI-like superfamily protein Neighboring gene F-box/RNI-like superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_106520.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
NP_177994.2
  • FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G69630.1); Has 1701 Blast hits to 1666 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29607689..29609441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106520.3 → NP_177994.2  FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177994.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBU3, Q0WU87, Q9ZV91
    UniProtKB/TrEMBL
    A0A5S9WVM7, A0A654ERS4
    Conserved Domains (4) summary
    smart00579
    Location:348 → 420
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:132 → 151
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:151 → 176
    LRR_2; Leucine Rich Repeat
    pfam00646
    Location:22 → 62
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZV91.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools