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SNARE-associated protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844248, updated on 18-Sep-2024

Summary

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Official Full Name
SNARE-associated protein-like protein
Primary source
TAIR:AT1G79070
Locus tag
AT1G79070
See related
Araport:AT1G79070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
YUP8H12R.31; YUP8H12R_31
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (29744271..29745815, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene recA DNA recombination family protein Neighboring gene miscRNA Neighboring gene TPRXL Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_106558.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of BLOC-1 complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SNARE-associated protein-like protein
NP_178028.2
  • SNARE-associated protein-related; Has 39 Blast hits to 39 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29744271..29745815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334868.1 → NP_001320379.1  SNARE-associated protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVR4, A0A654ERW5, Q8GXI5
    Conserved Domains (1) summary
    pfam14712
    Location:35 → 121
    Snapin_Pallidin; Snapin/Pallidin

  2. NM_106558.4 → NP_178028.2  SNARE-associated protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178028.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVR4, A0A654ERW5, Q8GXI5
    Conserved Domains (1) summary
    pfam14712
    Location:35 → 121
    Snapin_Pallidin; Snapin/Pallidin
Nucleotide Protein
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