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OCT5 organic cation/carnitine transporter5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844279, updated on 18-Sep-2024

Summary

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Official Symbol
OCT5
Official Full Name
organic cation/carnitine transporter5
Primary source
TAIR:AT1G79410
Locus tag
AT1G79410
See related
Araport:AT1G79410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtOCT5; organic cation/carnitine transporter5; T8K14.17; T8K14_17
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Genomic context

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See OCT5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (29867854..29869784, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ca(2)-dependent phospholipid-binding protein (Copine) family Neighboring gene centrosomal protein Neighboring gene cation/H+ exchanger 2 Neighboring gene C-type mannose receptor (DUF620) Neighboring gene Homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane. Küfner I, et al. BMC Res Notes, 2008 Jul 11. PMID 18710496, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_106589.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cellular response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
organic cation/carnitine transporter5
NP_178059.1
  • organic cation/carnitine transporter5 (5-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 6 (TAIR:AT1G16370.1); Has 11548 Blast hits to 11506 proteins in 1434 species: Archae - 261; Bacteria - 5062; Metazoa - 3508; Fungi - 1334; Plants - 912; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29867854..29869784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106589.3 → NP_178059.1  organic cation/carnitine transporter5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178059.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7V4, Q9SAK7
    UniProtKB/TrEMBL
    A0A654EQD3, A0A7G2E705
    Conserved Domains (1) summary
    cd17378
    Location:83 → 488
    MFS_OCT_plant; Plant organic cation/carnitine transporters of the Major Facilitator Superfamily of transporters
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAK7.1

Gene LinkOut

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