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kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844295, updated on 18-Sep-2024

Summary

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Official Full Name
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein
Primary source
TAIR:AT1G79570
Locus tag
AT1G79570
See related
Araport:AT1G79570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T8K14.1; T8K14_1
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (29932578..29938856, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phosphoglycerate kinase Neighboring gene FTSH protease 12 Neighboring gene ncRNA Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene syntaxin of plants 52

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RAF-like protein kinases mediate a deeply conserved, rapid auxin response. Kuhn A, et al. Cell, 2024 Jan 4. PMID 38128538, Free PMC Article
  2. Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases. Rudrabhatla P, et al. Plant Mol Biol, 2006 Jan. PMID 16429265
  3. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001334889.1
NM_001334890.1
NM_001334891.1
NM_001334892.1
NM_106605.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine/tyrosine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to auxin stimulus IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of auxin mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in signal transduction IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein
NP_178075.1
  • Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G16270.2); Has 118967 Blast hits to 117429 proteins in 4809 species: Archae - 112; Bacteria - 12197; Metazoa - 45923; Fungi - 10276; Plants - 32353; Viruses - 463; Other Eukaryotes - 17643 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29932578..29938856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106605.4 → NP_178075.1  kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178075.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178WCL4, A0A1P8ASQ6, Q0WMT5, Q56WL1, Q9SAJ2
    UniProtKB/TrEMBL
    A0A384LIC3, A0A5S9WVS8
    Conserved Domains (2) summary
    cd06410
    Location:180 → 276
    PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
    cd13999
    Location:970 → 1227
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

  2. NM_001334889.1 → NP_001321988.1  kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178WCL4, A0A1P8ASQ6, Q0WMT5, Q56WL1, Q9SAJ2
    UniProtKB/TrEMBL
    A0A384LIC3, A0A5S9WVS8
    Conserved Domains (2) summary
    cd06410
    Location:180 → 276
    PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
    cd13999
    Location:970 → 1227
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

  3. NM_001334891.1 → NP_001321989.1  kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASK1, A0A5S9WVS8

  4. NM_001334890.1 → NP_001321990.1  kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVS8

  5. NM_001334892.1 → NP_001321987.1  kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASK1, A0A5S9WVS8
Nucleotide Protein
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