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PSF1 partner of SLD five 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844359, updated on 18-Sep-2024

Summary

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Official Symbol
PSF1
Official Full Name
partner of SLD five 1
Primary source
TAIR:AT1G80190
Locus tag
AT1G80190
See related
Araport:AT1G80190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18B13.27; F18B13_27; partner of SLD five 1
Summary
Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.
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Genomic context

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See PSF1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (30158923..30161829)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Mov34/MPN/PAD-1 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice. Shultz RW, et al. Plant Physiol, 2007 Aug. PMID 17556508, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334965.1
NM_001334966.1
NM_106668.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication initiation TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of GINS complex IEA
Inferred from Electronic Annotation
more info
  
part_of GINS complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
partner of SLD five 1
NP_178136.1
  • partner of SLD five 1 (PSF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication initiation; LOCATED IN: GINS complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf1 (InterPro:IPR005339); Has 334 Blast hits to 334 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 142; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30158923..30161829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334962.1 → NP_001323118.1  partner of SLD five 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AW89
    Conserved Domains (2) summary
    cd11710
    Location:9 → 90
    GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
    cd21696
    Location:102 → 150
    GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

  2. NM_001334963.1 → NP_001323117.1  partner of SLD five 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
    Conserved Domains (2) summary
    cd11710
    Location:3 → 139
    GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
    cd21696
    Location:151 → 199
    GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

  3. NM_001334964.1 → NP_001323120.1  partner of SLD five 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
    Conserved Domains (2) summary
    cd11710
    Location:3 → 139
    GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
    cd21696
    Location:151 → 199
    GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

  4. NM_106668.6 → NP_178136.1  partner of SLD five 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178136.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
    Conserved Domains (2) summary
    cd11710
    Location:3 → 139
    GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
    cd21696
    Location:151 → 199
    GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

  5. NM_001334965.1 → NP_001323116.1  partner of SLD five 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W280, A0A1P8AW53
    Conserved Domains (2) summary
    cd11710
    Location:3 → 139
    GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
    cd21696
    Location:151 → 193
    GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1

  6. NM_001334966.1 → NP_001323119.1  partner of SLD five 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W166, A0A178W280, A0A384KWN4, Q9SSC0
    Conserved Domains (2) summary
    cd11710
    Location:3 → 139
    GINS_A_psf1; Alpha-helical domain of GINS complex protein Psf1
    cd21696
    Location:151 → 199
    GINS_B_Psf1; beta-strand (B) domain of GINS complex protein Psf1
Nucleotide Protein
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