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Nucleotide-diphospho-sugar transferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844369, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleotide-diphospho-sugar transferases superfamily protein
Primary source
TAIR:AT1G80290
Locus tag
AT1G80290
See related
Araport:AT1G80290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5I6.4; F5I6_4
Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (30187920..30189823)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component Neighboring gene PENTATRICOPEPTIDE REPEAT 596 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene nucleotide transporter 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene sulfate transmembrane transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084385.1
NM_106678.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nucleotide-diphospho-sugar transferases superfamily protein
NP_001077854.1
  • Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 640 Blast hits to 640 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 8; Plants - 102; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
NP_565236.1
  • Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30187920..30189823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106678.3 → NP_565236.1  Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565236.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HS52, Q8LG66, Q9C975
    UniProtKB/TrEMBL
    A0A0K1SBD7, A0A178W8U1, A0A384LP15, A0A5S9WW01
    Conserved Domains (1) summary
    pfam09258
    Location:48 → 307
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. NM_001084385.1 → NP_001077854.1  Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077854.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WW01
    Conserved Domains (1) summary
    pfam09258
    Location:56 → 312
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C975.1

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