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PDE318 P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844416, updated on 18-Sep-2024

Summary

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Official Symbol
PDE318
Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT1G80770
Locus tag
AT1G80770
See related
Araport:AT1G80770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23A5.12; F23A5_12; pigment defective 318
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Genomic context

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See PDE318 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (30355025..30357988)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transcription factor TFIIIC, tau55-related protein Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene NOD26-like intrinsic protein 6;1 Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene XH/XS domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001198522.1
NM_001335005.1
NM_001335006.1
NM_001335007.1
NM_001335008.1
NM_106725.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001185451.1
  • pigment defective 318 (PDE318); FUNCTIONS IN: GTP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1).
NP_178192.1
  • pigment defective 318 (PDE318); FUNCTIONS IN: ferrous iron transmembrane transporter activity, GTP binding; INVOLVED IN: ferrous iron transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), Ferrous iron transport protein B, N-terminal (InterPro:IPR011619); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 11067 Blast hits to 11052 proteins in 2859 species: Archae - 320; Bacteria - 7505; Metazoa - 379; Fungi - 348; Plants - 242; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30355025..30357988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106725.5 → NP_178192.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178192.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAU9, A0A5S9WW58, Q8L7Q9
    Conserved Domains (2) summary
    cd01897
    Location:254 → 432
    NOG; Nucleolar GTP-binding protein (NOG)
    COG1084
    Location:92 → 442
    Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]

  2. NM_001335005.1 → NP_001320866.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAU9, A0A1P8AP60, A0A5S9WW58

  3. NM_001335006.1 → NP_001320868.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAU9, A0A1P8AP55, A0A5S9WW58

  4. NM_001335007.1 → NP_001320869.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAU9, A0A1P8APB2, A0A5S9WW58

  5. NM_001335008.1 → NP_001320867.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAU9, A0A1P8AP72, A0A5S9WW58

  6. NM_001198522.1 → NP_001185451.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185451.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HU14
    Conserved Domains (2) summary
    cd01897
    Location:158 → 336
    NOG; Nucleolar GTP-binding protein (NOG)
    COG1084
    Location:2 → 346
    Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
Nucleotide Protein
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