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F-box and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844436, updated on 18-Sep-2024

Summary

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Official Full Name
F-box and Leucine Rich Repeat domains containing protein
Primary source
TAIR:AT1G80960
Locus tag
AT1G80960
See related
Araport:AT1G80960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23A5.32; F23A5_32
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (30415123..30419047)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MIF4G domain-containing protein / MA3 domain-containing protein Neighboring gene Snf1 kinase interactor-like protein Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene ncRNA Neighboring gene XH domain-containing protein Neighboring gene stress response NST1-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335024.1
NM_001335025.1
NM_001335026.1
NM_106744.4
NM_202465.2
NM_202466.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box and Leucine Rich Repeat domains containing protein
NP_001319434.1
  • F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 1565 Blast hits to 1552 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1563; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974194.1
  • F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974195.1
  • F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30415123..30419047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335024.1 → NP_001319434.1  F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4VCM7, Q3EC95, Q9SAG4

  2. NM_202465.2 → NP_974194.1  F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974194.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4VCM7, Q3EC95, Q9SAG4
    Conserved Domains (2) summary
    sd00032
    Location:189 → 210
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:50 → 97
    F-box; F-box domain

  3. NM_202466.2 → NP_974195.1  F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974195.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HVT7
    Conserved Domains (2) summary
    sd00032
    Location:189 → 210
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:50 → 97
    F-box; F-box domain

  4. NM_106744.4 → NP_178211.3  F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178211.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4VCM7, Q3EC95, Q9SAG4
    Conserved Domains (2) summary
    sd00032
    Location:189 → 210
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:50 → 97
    F-box; F-box domain

  5. NM_001335025.1 → NP_001323070.1  F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVU7

  6. NM_001335026.1 → NP_001323069.1  F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVZ7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAG4.3

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