U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BER1 Ber1p [ Saccharomyces cerevisiae S288C ]

Gene ID: 851130, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
BER1
Official Full Name
Ber1p
Primary source
SGD:S000004404
Locus tag
YLR412W
See related
AllianceGenome:SGD:S000004404; FungiDB:YLR412W; VEuPathDB:YLR412W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Involved in microtubule-based process. Located in cytoplasm. Orthologous to human SRRD (SRR1 domain containing). [provided by Alliance of Genome Resources, Jan 2025]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See BER1 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (948368..949192)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene gag protein Neighboring gene gag-pol fusion protein Neighboring gene high-affinity Cu transporter CTR3 Neighboring gene uncharacterized protein Neighboring gene Ina1p

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The evolutionary conserved BER1 gene is involved in microtubule stability in yeast. Fiechter V, et al. Curr Genet, 2008 Feb. PMID 18064466
  2. Global protein expression profiling of budding yeast in response to DNA damage. Lee MW, et al. Yeast, 2007 Mar. PMID 17351896
  3. Profilin 1 associates with stress granules and ALS-linked mutations alter stress granule dynamics. Figley MD, et al. J Neurosci, 2014 Jun 11. PMID 24920614, Free PMC Article
  4. Functional profiling of the Saccharomyces cerevisiae genome. Giaever G, et al. Nature, 2002 Jul 25. PMID 12140549
  5. Clathrin light chain directs endocytosis by influencing the binding of the yeast Hip1R homologue, Sla2, to F-actin. Boettner DR, et al. Mol Biol Cell, 2011 Oct. PMID 21849475, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in microtubule-based process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Ber1p
NP_013516.1
  • Protein involved in microtubule-related processes; GFP-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene; similar to Arabidopsis SRR1 gene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    948368..949192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182300.1 → NP_013516.1  TPA: Ber1p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013516.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VZ48, Q06688
    UniProtKB/TrEMBL
    B3RHS3, N1P1W1
    Conserved Domains (1) summary
    pfam07985
    Location:57 → 113
    SRR1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q06688.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools