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RPS16B ribosomal 40S subunit protein S16B [ Saccharomyces cerevisiae S288C ]

Gene ID: 851476, updated on 4-Jan-2025

Summary

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Official Symbol
RPS16B
Official Full Name
ribosomal 40S subunit protein S16B
Primary source
SGD:S000002241
Locus tag
YDL083C
See related
AllianceGenome:SGD:S000002241; FungiDB:YDL083C; VEuPathDB:YDL083C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and translational initiation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See RPS16B in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_001136.10 (306926..307789, complement)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone reductase (H(+)-translocating) NDE2 Neighboring gene ATP-dependent RNA helicase SUB2 Neighboring gene ribosomal 60S subunit protein L13A Neighboring gene ribosomal protein P1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Role of the uS9/yS16 C-terminal tail in translation initiation and elongation in Saccharomyces cerevisiae. Jindal S, et al. Nucleic Acids Res, 2019 Jan 25. PMID 30481328, Free PMC Article
  2. Structure and organization of two linked ribosomal protein genes in yeast. Molenaar CM, et al. Nucleic Acids Res, 1984 Oct 11. PMID 6387623, Free PMC Article
  3. Rps5-Rps16 communication is essential for efficient translation initiation in yeast S. cerevisiae. Ghosh A, et al. Nucleic Acids Res, 2014 Jul. PMID 24948608, Free PMC Article
  4. Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability. Duttagupta R, et al. Mol Cell Biol, 2005 Jul. PMID 15964806, Free PMC Article
  5. Transcription factor substitution during the evolution of fungal ribosome regulation. Hogues H, et al. Mol Cell, 2008 Mar 14. PMID 18342603, Free PMC Article

See all (90) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
involved_in translational initiation IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit NAS
Non-traceable Author Statement
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal 40S subunit protein S16B
NP_010200.1
  • Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S16 and bacterial S9; RPS16B has a paralog, RPS16A, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 Reference assembly

    Range
    306926..307789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001180142.1 → NP_010200.1  TPA: ribosomal 40S subunit protein S16B [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_010200.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VRR6, P0CX51, P0CX52, P26787, P40213
    UniProtKB/TrEMBL
    A6ZMK2, B3LGX7, C7GQ83, C8Z6M1, G2WC80, N1P5Z6
    Conserved Domains (1) summary
    PLN00210
    Location:3 → 143
    PLN00210; 40S ribosomal protein S16; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CX51.1
P0CX52.1

Gene LinkOut

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