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uncharacterized protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 854516, updated on 9-Dec-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
SGD:S000005865
Locus tag
YOR338W
See related
AllianceGenome:SGD:S000005865; FungiDB:YOR338W; VEuPathDB:YOR338W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable chromatin binding activity and transcription coactivator activity. Involved in ascospore formation. Predicted to be part of Rpd3L-Expanded complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (956898..957989)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Kre5p Neighboring gene Tea1p Neighboring gene putative E2 ubiquitin-protein ligase UBC11 Neighboring gene DNA-directed RNA polymerase I subunit RPA43

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001147.6

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence analysis of a 40 kb segment on the right arm of yeast chromosome XV reveals 18 open reading frames including a new pyruvate kinase and three homologues to chromosome I genes. Purnelle B, et al. Yeast, 1996 Nov. PMID 8948102
  2. Scp160p associates with specific mRNAs in yeast. Li AM, et al. Nucleic Acids Res, 2003 Apr 1. PMID 12654998, Free PMC Article
  3. The function and properties of the Azf1 transcriptional regulator change with growth conditions in Saccharomyces cerevisiae. Slattery MG, et al. Eukaryot Cell, 2006 Feb. PMID 16467472, Free PMC Article
  4. Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae. Enyenihi AH, et al. Genetics, 2003 Jan. PMID 12586695, Free PMC Article
  5. Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. Beltrao P, et al. PLoS Biol, 2009 Jun 16. PMID 19547744, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ascospore formation HMP PubMed 
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Rpd3L-Expanded complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_014983.1
  • hypothetical protein; YOR338W transcription is regulated by Azf1p and its transcript is a specific target of the G protein effector Scp160p; identified as being required for sporulation in a high-throughput mutant screen; YOR338W has a paralog, FUN19, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    956898..957989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183758.1 → NP_014983.1  TPA: uncharacterized protein YOR338W [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014983.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6W333, Q06855, Q99326
    UniProtKB/TrEMBL
    A6ZPG8, B3LJZ7, B5VSL6, C7GNS8, N1NYZ2
    Conserved Domains (1) summary
    pfam04433
    Location:285 → 354
    SWIRM; SWIRM domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99326.1

Gene LinkOut

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