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STB4 Stb4p [ Saccharomyces cerevisiae S288C ]

Gene ID: 855033, updated on 4-Jan-2025

Summary

Official Symbol
STB4
Official Full Name
Stb4p
Primary source
SGD:S000004621
Locus tag
YMR019W
See related
AllianceGenome:SGD:S000004621; FungiDB:YMR019W; VEuPathDB:YMR019W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables sequence-specific DNA binding activity. Predicted to be involved in DNA-templated transcription and regulation of transcription by RNA polymerase II. Located in mitochondrion. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See STB4 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (312156..315005)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Spo20p Neighboring gene Pex9p Neighboring gene polyamine oxidase Neighboring gene Mac1p

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding HDA PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in biological_process ND
No biological Data available
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
Stb4p
NP_013732.1
  • Putative transcription factor; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins; computational analysis suggests a role in regulation of expression of genes encoding transporters; binds Sin3p in a two-hybrid assay

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    312156..315005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182515.1NP_013732.1  TPA: Stb4p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013732.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VZJ3, P50104
    UniProtKB/TrEMBL
    C7GLA0
    Conserved Domains (2) summary
    smart00066
    Location:82122
    GAL4; GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
    pfam04082
    Location:401661
    Fungal_trans; Fungal specific transcription factor domain