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ECM23 Ecm23p [ Saccharomyces cerevisiae S288C ]

Gene ID: 856086, updated on 9-Dec-2024

Summary

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Official Symbol
ECM23
Official Full Name
Ecm23p
Primary source
SGD:S000005942
Locus tag
YPL021W
See related
AllianceGenome:SGD:S000005942; FungiDB:YPL021W; VEuPathDB:YPL021W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
SRD2
Summary
Enables sequence-specific DNA binding activity. Involved in pseudohyphal growth. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See ECM23 in Genome Data Viewer
Location:
chromosome: XVI
Exon count:
1
Sequence:
Chromosome: XVI; NC_001148.4 (511101..511664)

Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene methylenetetrahydrofolate reductase (NAD(P)H) MET12 Neighboring gene ssDNA endodeoxyribonuclease RAD1 Neighboring gene SUMO protease ULP1 Neighboring gene vacuolar transporter chaperone

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001148.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SRD2 gene is involved in Saccharomyces cerevisiae morphogenesis. Cañizares JV, et al. Arch Microbiol, 2002 Apr. PMID 11889490
  2. Sequestration of mRNAs Modulates the Timing of Translation during Meiosis in Budding Yeast. Jin L, et al. Mol Cell Biol, 2015 Oct. PMID 26217015, Free PMC Article
  3. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Badis G, et al. Mol Cell, 2008 Dec 26. PMID 19111667, Free PMC Article
  4. Large scale identification of genes involved in cell surface biosynthesis and architecture in Saccharomyces cerevisiae. Lussier M, et al. Genetics, 1997 Oct. PMID 9335584, Free PMC Article
  5. Epistatic relationships reveal the functional organization of yeast transcription factors. Zheng J, et al. Mol Syst Biol, 2010 Oct 5. PMID 20959818, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding HDA PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
  
involved_in pseudohyphal growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Ecm23p
NP_015304.1
  • Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001148.4 Reference assembly

    Range
    511101..511664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183835.1 → NP_015304.1  TPA: Ecm23p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_015304.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6W3Z1, Q02710
    UniProtKB/TrEMBL
    C8ZJ07, G2WPF7, N1NVZ6
    Conserved Domains (1) summary
    smart00401
    Location:127 → 178
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q02710.1

Gene LinkOut

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