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hypothetical protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8617783, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein
Primary source
dictyBase:DDB_G0271088
Locus tag
DDB_G0271088
See related
AmoebaDB:DDB_G0271088; VEuPathDB:DDB_G0271088
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0216773; DDB_0216773
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_007087.3 (4895305..4899887)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene WD40 repeat-containing protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables small GTPase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
  
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    4895305..4899887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_641719.1 → XP_646811.1  hypothetical protein DDB_G0271088 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_646811.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q55BL9
    Conserved Domains (4) summary
    cd09122
    Location:833 → 983
    PLDc_Tdp1_1; Catalytic domain, repeat 1, of Tyrosyl-DNA phosphodiesterase
    cd09123
    Location:1090 → 1276
    PLDc_Tdp1_2; Catalytic domain, repeat 2, of tyrosyl-DNA phosphodiesterase
    pfam06156
    Location:349 → 424
    DUF972; Protein of unknown function (DUF972)
    pfam14662
    Location:274 → 466
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
Nucleotide Protein
Heading Accession and Version

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