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Skadu skadu [ Drosophila melanogaster (fruit fly) ]

Gene ID: 8673966, updated on 9-Dec-2024

Summary

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Official Symbol
Skaduprovided by FlyBase
Official Full Name
skaduprovided by FlyBase
Primary source
FLYBASE:FBgn0259922
Locus tag
Dmel_CG42448
See related
AllianceGenome:FB:FBgn0259922
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG42448; Dmel\CG42448; SKADU
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in chromosome organization. Predicted to be located in chromatin. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See Skadu in Genome Data Viewer
Location:
35D3-35D3; 2-51 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (15547519..15548243)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (15547519..15548243)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44864 Neighboring gene long non-coding RNA:CR43761 Neighboring gene long non-coding RNA:CR45728 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A rapidly evolving genomic toolkit for Drosophila heterochromatin. Levine MT, et al. Fly (Austin), 2013 Jul-Sep. PMID 23519206, Free PMC Article
  2. Achiasmy: Male Fruit Flies Are Not Ready to Mix. John A, et al. Front Cell Dev Biol, 2016. PMID 27486580, Free PMC Article
  3. Phylogenomic analysis reveals dynamic evolutionary history of the Drosophila heterochromatin protein 1 (HP1) gene family. Levine MT, et al. PLoS Genet, 2012. PMID 22737079, Free PMC Article
  4. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
  5. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables chromatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromosome organization ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chromatin ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
skadu
Names
CG42448-PA
Skadu-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    15547519..15548243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001169514.2 → NP_001162985.1  skadu [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001162985.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    C0P8M9
    Conserved Domains (1) summary
    cl00044
    Location:68 → 116
    ChSh; Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0P8M9 C0P8M9

Gene LinkOut

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